classifying events

Only two path events are considered. Probe to span mapping is made using gene model.

If any span contains a terminal exon the event is marked as alt_end or alt_start.

The skip and include paths are examined with counts of
exons, junctions and exonjunctions.

modeskip exonsskip junctionsskip ejincl exonsincl junctionsincl ej
If any span contains a terminal exon the event is marked as alt_end or alt_start
retained_intron010102
alt3p010111
alt5p010111
twin cassette010230
alt cassette010120
mutually exclusive120120
complexother



The script used is in the edscripts.tgz package